Coverage: seqair/rust

Implemented 299/319

Tested 294/319

Rule	Impl	Tests
bam.header.magic	header.rs:73	compare_header.rs:16
bam.header.non_negative_lengths	header.rs:86	header.rs:404
bam.header.references	header.rs:75	compare_header.rs:15
bam.header.target_len	header.rs:209	compare_header.rs:13
bam.header.target_names	header.rs:214	compare_header.rs:12
bam.header.text	header.rs:74	compare_header.rs:17
bam.header.tid_lookup	header.rs:200	compare_header.rs:14
bam.index.bai_magic	index.rs:85	compare_records.rs:68
bam.index.bai_parse	index.rs:86	compare_records.rs:69
bam.index.bgzf_block_validation	index.rs:323	index.rs:653
bam.index.bin0_required	index.rs:212	index.rs:501
bam.index.bin0_separate+2	index.rs:66 index.rs:213	index.rs:481
bam.index.bin_calculation	index.rs:369	compare_records.rs:71
bam.index.chunk_cache	index.rs:155 reader.rs:187 reader.rs:311	reader.rs:441
bam.index.chunk_separation+2	index.rs:67 index.rs:214	index.rs:482
bam.index.csi_support
bam.index.region_query	index.rs:175	compare_records.rs:70
bam.reader.coordinate_overflow	reader.rs:82 reader.rs:87	reader.rs:493 reader.rs:507 reader.rs:520 reader.rs:533
bam.reader.fetch_into+2	reader.rs:181	compare_bam_with_htslib.rs:59 compare_records.rs:59
bam.reader.fork	reader.rs:156	fork.rs:28 fork.rs:67
bam.reader.fork_arc_identity	reader.rs:172	fork.rs:68 fork.rs:80
bam.reader.fork_concurrent	reader.rs:159	fork.rs:137 fork.rs:168
bam.reader.fork_equivalence	reader.rs:158	fork.rs:29 fork.rs:48
bam.reader.fork_independence	reader.rs:157	fork.rs:106
bam.reader.header_access	reader.rs:121	compare_header.rs:19
bam.reader.open	reader.rs:120	compare_header.rs:18
bam.reader.overlap_filter	reader.rs:182	compare_records.rs:60
bam.reader.propagate_errors	reader.rs:241 reader.rs:397
bam.reader.secondary_supplementary_included+2	reader.rs:184	pileup.rs:253
bam.reader.shared_state	reader.rs:107	fork.rs:93
bam.reader.sorted_order+2	reader.rs:183	compare_records.rs:61
bam.reader.unmapped_skipped+2	reader.rs:252	compare_records.rs:62
bam.record.aux_array_unsupported
bam.record.aux_parse	record.rs:114	compare_records.rs:192
bam.record.checked_offsets	record.rs:203	record.rs:393 record_store.rs:360
bam.record.decode	record.rs:16	compare_bam_with_htslib.rs:60 compare_records.rs:95
bam.record.end_pos	record.rs:129	compare_bam_with_htslib.rs:83 compare_records.rs:97
bam.record.fields	record.rs:15	compare_bam_with_htslib.rs:61 compare_bam_with_htslib.rs:82 compare_records.rs:96
bam.record.flag_first	record.rs:94	compare_records.rs:158
bam.record.flag_reverse	record.rs:89	compare_records.rs:157
bam.record.flag_second	record.rs:99	compare_records.rs:159
bam.record.flag_unmapped	record.rs:104	compare_records.rs:160
bam.record.max_size	region_buf.rs:435	region_buf.rs:565
bam.record.raw_aux	record.rs:259	compare_records.rs:193
bam.record.seq_4bit	record.rs:75	compare_bam_with_htslib.rs:84 compare_records.rs:129
bam.record.seq_at	record.rs:109	compare_records.rs:130
bam.record.seq_at_simd+2	record.rs:76	compare_records.rs:131
bam.record.zero_refspan	record.rs:130	pileup.rs:270
base_decode.alignment	pileup.rs:96	base_decode.rs:60
base_decode.ascii_batch	base.rs:76	base.rs:573 base.rs:614 base.rs:676
base_decode.ascii_scalar_equivalence	base.rs:114	base.rs:537 base.rs:545 base.rs:602
base_decode.ascii_simd	base.rs:77	base.rs:536 base.rs:603
base_decode.decode	seq.rs:150	base_decode.rs:7 compare_bam_with_htslib.rs:86 compare_bam_with_htslib.rs:242
base_decode.slab	record_store.rs:63	base_decode.rs:47
base_decode.table	seq.rs:108	base_decode.rs:6 base_decode.rs:21 base_decode.rs:34
base_decode.table_invariant	seq.rs:109	seq.rs:474 seq.rs:485
bgzf.block_offset_tracking	bgzf.rs:81 bgzf.rs:170	bgzf.rs:58
bgzf.bsize	bgzf.rs:166	compare_header.rs:21
bgzf.crc32	bgzf.rs:169	bgzf.rs:55 bgzf.rs:81 compare_bgzf_crate.rs:50 compare_bgzf_crate.rs:130
bgzf.decompression	bgzf.rs:167	compare_bgzf_crate.rs:49 compare_bgzf_crate.rs:129 compare_header.rs:22
bgzf.eof	bgzf.rs:168	compare_records.rs:74
bgzf.fast_header	bgzf.rs:172	bgzf.rs:56
bgzf.libdeflate	bgzf.rs:72	compare_header.rs:24
bgzf.magic	bgzf.rs:165	compare_header.rs:20
bgzf.max_block_size	bgzf.rs:263	bgzf.rs:446
bgzf.read_exact	bgzf.rs:315	compare_header.rs:23
bgzf.read_partial	bgzf.rs:341	compare_records.rs:75
bgzf.resize_uninit	bgzf.rs:171	bgzf.rs:57
bgzf.seek	bgzf.rs:145	compare_records.rs:72
bgzf.virtual_offset	bgzf.rs:10	bgzf.rs:6 bgzf.rs:19 compare_records.rs:73
cigar.compact_op_position_invariant		cigar.rs:387
cigar.index	cigar.rs:96	cigar.rs:49
cigar.matches_indels	cigar.rs:75	cigar.rs:11 cigar.rs:20 cigar.rs:29 cigar.rs:38
cigar.operations	cigar.rs:7	cigar.rs:112
cigar.qpos_accuracy	cigar.rs:145	cigar.rs:244 compare_bam_with_htslib.rs:198 compare_pileup.rs:122
cigar.qpos_at	cigar.rs:144	cigar.rs:50 cigar.rs:62 cigar.rs:73 cigar.rs:84 cigar.rs:93 cigar.rs:102 cigar.rs:219 cigar.rs:257 compare_pileup.rs:121
cigar.qpos_bounds	cigar.rs:254	cigar.rs:401
cram.bitstream	bitstream.rs:4	bitstream.rs:64
cram.block.crc32	block.rs:40	block.rs:314
cram.block.structure	block.rs:39	block.rs:201
cram.codec.arith
cram.codec.bzip2	block.rs:132	block.rs:263
cram.codec.fqzcomp
cram.codec.gzip	block.rs:123	block.rs:231
cram.codec.lzma	block.rs:143	block.rs:289
cram.codec.normalize_checked	rans_nx16.rs:238	rans_nx16.rs:752
cram.codec.rans4x8	block.rs:153 rans.rs:11	rans.rs:276 compare_cram_with_htslib.rs:146
cram.codec.rans_nx16	block.rs:155 rans_nx16.rs:1	rans_nx16.rs:589
cram.codec.rans_sym_bounded+2	rans.rs:146
cram.codec.raw	block.rs:121	block.rs:202
cram.codec.state_step_safety	rans_nx16.rs:144
cram.codec.tok3	block.rs:157 tok3.rs:1	tok3.rs:464
cram.codec.uint7_bounded	rans_nx16.rs:96 tok3.rs:435	rans_nx16.rs:735
cram.codec.unknown	block.rs:159	block.rs:329
cram.compression.ds_encodings	compression_header.rs:241	compare_cram_parsing.rs:141
cram.compression.preservation	compression_header.rs:136	compare_cram_parsing.rs:140
cram.compression.substitution_matrix	compression_header.rs:55	compare_cram_parsing.rs:273
cram.compression.tag_encodings	compression_header.rs:348	compare_cram_parsing.rs:142
cram.container.header	container.rs:34	container.rs:157 container.rs:276 compare_cram_parsing.rs:74
cram.container.region_skip	reader.rs:290	compare_cram_with_htslib.rs:111
cram.edge.coordinate_clamp	reader.rs:394	compare_cram_parsing.rs:200
cram.edge.empty_slice	slice.rs:113	compare_cram_parsing.rs:198
cram.edge.long_reads	slice.rs:336	compare_cram_parsing.rs:201
cram.edge.missing_reference	reader.rs:379	reader.rs:499
cram.edge.position_overflow	slice.rs:267	compare_cram_with_htslib.rs:175
cram.edge.rans_sym_overflow	rans.rs:145	rans.rs:277
cram.edge.reference_mismatch	slice.rs:118	slice.rs:763
cram.edge.seq_unknown	slice.rs:402	compare_cram_parsing.rs:199
cram.edge.unknown_read_names	pileup.rs:172 slice.rs:106
cram.edge.unmapped_reads	slice.rs:419	compare_cram_with_htslib.rs:176
cram.encoding.beta	encoding.rs:225	encoding.rs:559
cram.encoding.byte_array_len	encoding.rs:369	encoding.rs:605
cram.encoding.byte_array_stop	encoding.rs:378	encoding.rs:595
cram.encoding.external	encoding.rs:214 encoding.rs:362	encoding.rs:576
cram.encoding.gamma	encoding.rs:239	compare_cram_parsing.rs:143
cram.encoding.huffman	encoding.rs:221	encoding.rs:491
cram.encoding.null	encoding.rs:212	encoding.rs:621
cram.encoding.subexp	encoding.rs:233	compare_cram_parsing.rs:144
cram.feature.quality_block
cram.feature.quality_score
cram.file.eof	container.rs:123	container.rs:207
cram.file.header_container	reader.rs:418	container.rs:245 container.rs:275 compare_cram_parsing.rs:32
cram.file.magic	reader.rs:223	compare_cram_parsing.rs:21
cram.index.multi_ref_slices	slice.rs:371	compare_cram_parsing.rs:118
cram.index.parse	index.rs:39	index.rs:149 compare_cram_parsing.rs:116
cram.index.query	index.rs:73	index.rs:164 compare_cram_parsing.rs:117
cram.index.unmapped	index.rs:74 index.rs:82	index.rs:179
cram.index.zero_span	index.rs:87	index.rs:203
cram.itf8	varint.rs:6	varint.rs:286
cram.ltf8	varint.rs:94	varint.rs:388
cram.perf.codec_overhead	reader.rs:293	compare_cram_parsing.rs:204
cram.perf.reference_caching	reader.rs:292	compare_cram_parsing.rs:203
cram.perf.slice_granularity	reader.rs:291	compare_cram_parsing.rs:202
cram.record.aux_tags	slice.rs:298	compare_cram_with_htslib.rs:171
cram.record.cigar_reconstruction	slice.rs:432	compare_cram_parsing.rs:197 compare_cram_with_htslib.rs:104
cram.record.decode_order	slice.rs:216	compare_cram_parsing.rs:195 compare_cram_with_htslib.rs:101 compare_cram_with_noodles.rs:77
cram.record.features	slice.rs:430	compare_cram_with_htslib.rs:109
cram.record.flags	slice.rs:238	compare_cram_with_htslib.rs:102 compare_cram_with_noodles.rs:109
cram.record.mate_attached	slice.rs:281	compare_cram_with_htslib.rs:174
cram.record.mate_detached	slice.rs:280	compare_cram_with_htslib.rs:173
cram.record.position	slice.rs:257	compare_cram_with_htslib.rs:103 compare_cram_with_noodles.rs:108
cram.record.quality	slice.rs:359	compare_cram_with_htslib.rs:145
cram.record.read_group	slice.rs:271	compare_cram_with_htslib.rs:170
cram.record.read_length	slice.rs:253	compare_cram_with_htslib.rs:105
cram.record.read_name	slice.rs:275	compare_cram_with_htslib.rs:106
cram.record.rg_tag	slice.rs:317	compare_cram_with_htslib.rs:172
cram.record.sequence	slice.rs:431	compare_cram_parsing.rs:196 compare_cram_with_htslib.rs:169
cram.scope.reference_required	reader.rs:246	compare_cram_parsing.rs:145
cram.scope.versions	reader.rs:230	compare_cram_with_htslib.rs:110
cram.slice.embedded_ref	slice.rs:161	compare_cram_parsing.rs:205
cram.slice.header	slice.rs:31	compare_cram_with_htslib.rs:107
cram.slice.multi_ref	slice.rs:249	compare_cram_with_htslib.rs:108
cram.slice.ref_bounds_warning+2	slice.rs:433	slice.rs:850
cram.slice.validated_lengths	slice.rs:42 slice.rs:121	slice.rs:874
cram.tok3.dz_len_reader	tok3.rs:143	tok3.rs:640
cram.tok3.name_count_limit	tok3.rs:21	tok3.rs:655
csi.bin_structure
csi.binning
csi.compression
csi.header
csi.magic
csi.no_linear_index
csi.pseudo_bin
csi.query
dedup.filter_independent	pileup.rs:316	dedup.rs:233
dedup.mate_detection	pileup.rs:161	dedup.rs:70 dedup.rs:88
dedup.mate_pairs_only	pileup.rs:162	dedup.rs:105
dedup.max_depth_independent	pileup.rs:317	dedup.rs:255
dedup.opt_in	pileup.rs:160	dedup.rs:40 dedup.rs:54
dedup.per_position	pileup.rs:315	dedup.rs:179 dedup.rs:207 dedup.rs:278
dedup.resolution_different_base	pileup.rs:361	dedup.rs:143 dedup.rs:160
dedup.resolution_same_base	pileup.rs:360	dedup.rs:123 dedup.rs:279
fasta.bgzf.decompress	reader.rs:233	fasta.rs:264
fasta.bgzf.detect	reader.rs:114 reader.rs:288	compare_fasta_with_htslib.rs:29
fasta.bgzf.gzi_missing	reader.rs:120	compare_fasta_with_htslib.rs:179
fasta.bgzf.gzi_required	reader.rs:117	compare_fasta_with_htslib.rs:30 compare_fasta_with_htslib.rs:180
fasta.bgzf.sequential_read	reader.rs:232	fasta.rs:265
fasta.errors	reader.rs:19	reader.rs:406 reader.rs:418 reader.rs:438 compare_fasta_with_htslib.rs:151 compare_fasta_with_htslib.rs:162
fasta.fetch.bounds_check	reader.rs:207	reader.rs:405 reader.rs:545 reader.rs:557 compare_fasta_with_htslib.rs:161
fasta.fetch.buffer_reuse	reader.rs:177 reader.rs:289	fasta.rs:319 fasta.rs:358
fasta.fetch.coordinates	reader.rs:84	fasta.rs:194
fasta.fetch.newline_stripping	reader.rs:262	fasta.rs:192
fasta.fetch.raw_bytes	reader.rs:176 reader.rs:185	reader.rs:346 reader.rs:629
fasta.fetch.unknown_sequence	reader.rs:196	reader.rs:417 compare_fasta_with_htslib.rs:150
fasta.fetch.uppercase	reader.rs:263	fasta.rs:193
fasta.fork.equivalence	reader.rs:455	fasta.rs:266
fasta.fork.independence	reader.rs:148	reader.rs:483 compare_fasta_with_htslib.rs:109
fasta.fork.operation	reader.rs:147	reader.rs:456 compare_fasta_with_htslib.rs:108
fasta.fork.shared_state	reader.rs:71	reader.rs:457 reader.rs:471 compare_fasta_with_htslib.rs:125
fasta.gzi.parse	gzi.rs:46	gzi.rs:180 gzi.rs:188 gzi.rs:198 gzi.rs:205 gzi.rs:303
fasta.gzi.sorted	gzi.rs:97	gzi.rs:283 gzi.rs:295
fasta.gzi.translate	gzi.rs:120	fasta.rs:115
fasta.gzi.within_block_bounds	gzi.rs:144	gzi.rs:266
fasta.index.fields	index.rs:89	index.rs:224 index.rs:242 index.rs:260 index.rs:279
fasta.index.location	reader.rs:275	reader.rs:335 reader.rs:437
fasta.index.missing	reader.rs:105	reader.rs:436
fasta.index.name_lookup	index.rs:65	index.rs:198 index.rs:216 index.rs:338
fasta.index.offset_calculation	index.rs:58	fasta.rs:17
fasta.index.parse	index.rs:64	index.rs:197
fasta.index.validation	index.rs:116	index.rs:302 index.rs:313 index.rs:327
fasta.plain.read	reader.rs:230	fasta.rs:191
fasta.plain.read_size	reader.rs:231	reader.rs:347 reader.rs:520 reader.rs:599
index.edge.large_refs
index.edge.name_mismatch
index.edge.no_records	index.rs:215	index.rs:532
index.shared_query	index.rs:108	unified_reader.rs:87
index.shared_types	index.rs:109	unified_reader.rs:88
io.checked_arithmetic
io.errors	bgzf.rs:32 index.rs:10 reader.rs:40 gzi.rs:7 index.rs:10	bgzf.rs:33
io.errors.typed_variants
io.minimal_public_api	bam.rs:40 cram.rs:4 sam.rs:4
io.named_constants	cigar.rs:8 flags.rs:4	bgzf.rs:90 cigar.rs:121
io.non_exhaustive_enums	reader.rs:20
io.platform_optimizations	seq.rs:10	seq_codec.rs:58
io.typed_cigar_ops	cigar.rs:19	cigar.rs:138 cigar.rs:152
io.typed_flags	flags.rs:6	bgzf.rs:108
perf.arena_capacity_hint+2	record_store.rs:84	perf.rs:267
perf.avoid_redundant_arena_get+2	pileup.rs:38	perf.rs:71
perf.cigar_binary_search	cigar.rs:100	perf.rs:184 perf.rs:220
perf.cigar_no_to_vec	pileup.rs:39	perf.rs:96
perf.no_sorted_indices	pileup.rs:37	perf.rs:46
perf.precompute_matches_indels	record.rs:26	perf.rs:131 perf.rs:151
perf.reuse_alignment_vec+2	pileup.rs:40	perf.rs:15
pileup.active_set	pileup.rs:34	compare_pileup.rs:84 pileup.rs:12
pileup.column_contents	pileup.rs:73	compare_bam_with_htslib.rs:159 compare_pileup.rs:83 pileup.rs:13
pileup.empty_positions_skipped	pileup.rs:281	pileup.rs:184
pileup.htslib_compat	pileup.rs:74	compare_bam_with_htslib.rs:157 compare_bam_with_htslib.rs:243 compare_pileup.rs:51
pileup.max_depth	pileup.rs:148	pileup.rs:120
pileup.max_depth_per_position	pileup.rs:149 pileup.rs:327	pileup.rs:137
pileup.position_iteration	pileup.rs:219	compare_bam_with_htslib.rs:158 compare_pileup.rs:52 pileup.rs:44
pileup.qpos	pileup.rs:95	compare_bam_with_htslib.rs:160 compare_bam_with_htslib.rs:197 compare_pileup.rs:119 pileup.rs:163
pileup.qpos_none	pileup.rs:293	compare_pileup.rs:120
pileup.read_filter	pileup.rs:154	pileup.rs:74 pileup.rs:93
pileup.soft_clip_at_position	pileup.rs:36	pileup.rs:234
pileup.unmapped_excluded	pileup.rs:255	pileup.rs:203
pileup.zero_refspan_reads	pileup.rs:35	pileup.rs:218
record_store.capacity	record_store.rs:61	record_store.rs:76
record_store.checked_offsets	record_store.rs:118 record_store.rs:124 record_store.rs:132	record_store.rs:374
record_store.clear+2	record_store.rs:59	record_store.rs:54
record_store.field_access	record_store.rs:58	compare_bam_with_htslib.rs:85 record_store.rs:7 record_store.rs:85
record_store.no_rc	record_store.rs:62	record_store.rs:101
record_store.push_fields	record_store.rs:167	record_store.rs:124
record_store.push_raw+2	record_store.rs:17 record_store.rs:57	record_store.rs:6 record_store.rs:33
record_store.region_scoped	record_store.rs:60	record_store.rs:102
region_buf.decompress	region_buf.rs:220	compare_bgzf_crate.rs:51 compare_bgzf_crate.rs:131 region_buf.rs:40
region_buf.drop_no_panic	region_buf.rs:460	region_buf.rs:541
region_buf.empty	region_buf.rs:76	region_buf.rs:14
region_buf.fast_header	region_buf.rs:221	region_buf.rs:43
region_buf.fetch_into+2	reader.rs:185	region_buf.rs:82
region_buf.load	region_buf.rs:75	region_buf.rs:39
region_buf.merge_chunks	region_buf.rs:507	region_buf.rs:24
region_buf.no_bin0	reader.rs:186	region_buf.rs:83
region_buf.not_cram	reader.rs:289	compare_cram_with_htslib.rs:113
region_buf.read_exact	region_buf.rs:364	region_buf.rs:41
region_buf.seek_virtual	region_buf.rs:165	region_buf.rs:64
region_buf.virtual_offset	region_buf.rs:215	region_buf.rs:42
sam.edge.empty_lines	reader.rs:250	sam_edge_cases.rs:39
sam.edge.line_spanning_blocks	reader.rs:601	sam_edge_cases.rs:242
sam.edge.long_cigar	reader.rs:429	sam_proptests.rs:59
sam.edge.missing_qual	reader.rs:389	sam_edge_cases.rs:127
sam.edge.missing_seq	reader.rs:380	sam_edge_cases.rs:102
sam.edge.rname_star	reader.rs:334	sam_edge_cases.rs:65
sam.header.parse	reader.rs:598	compare_sam_with_htslib.rs:260 sam_gz.rs:161
sam.header.preserve_full_text	reader.rs:600	sam_gz.rs:162
sam.header.sq_required	reader.rs:599	compare_sam_with_htslib.rs:261 sam_edge_cases.rs:148
sam.index.csi+2
sam.index.locate+2	reader.rs:627	sam_edge_cases.rs:222
sam.index.tabix	reader.rs:624	sam_edge_cases.rs:223
sam.perf.bulk_read	reader.rs:198	sam_gz.rs:63
sam.reader.fetch_into	reader.rs:195	compare_sam_with_htslib.rs:82 sam_fork.rs:47 sam_gz.rs:61
sam.reader.open	reader.rs:147	sam_gz.rs:60
sam.reader.overlap_filter+2	reader.rs:370	sam_gz.rs:62
sam.reader.overlap_halfopen	reader.rs:371	reader.rs:908 reader.rs:921 reader.rs:934
sam.reader.reject_uncompressed	reader.rs:150	reader.rs:865
sam.reader.sorted_order	reader.rs:196	sam_edge_cases.rs:180
sam.record.aux_int_range+2	reader.rs:570	reader.rs:980 reader.rs:1009
sam.record.aux_parse_strict	reader.rs:469	reader.rs:947
sam.record.aux_tags	reader.rs:468	compare_sam_with_htslib.rs:151 compare_sam_with_htslib.rs:177
sam.record.cigar_parse	reader.rs:428	compare_sam_with_htslib.rs:109 sam_gz.rs:94 sam_proptests.rs:58
sam.record.coordinate_conversion	reader.rs:351	compare_sam_with_htslib.rs:84 sam_gz.rs:93
sam.record.parse	reader.rs:305	compare_sam_with_htslib.rs:83 sam_gz.rs:92
sam.record.parse_int_nonempty	reader.rs:679	reader.rs:962 reader.rs:968 reader.rs:974
sam.record.qual_decode	reader.rs:388	compare_sam_with_htslib.rs:111 sam_gz.rs:96 sam_gz.rs:132 sam_proptests.rs:134
sam.record.seq_decode	reader.rs:379	compare_sam_with_htslib.rs:110 sam_gz.rs:95 sam_gz.rs:131 sam_proptests.rs:99
seq.decode_dispatch	seq.rs:7	seq_codec.rs:57
seq.decode_pair_table	seq.rs:5	seq_codec.rs:37
seq.decode_scalar	seq.rs:4	seq_codec.rs:8 seq_codec.rs:19 seq_codec.rs:28
seq.decode_simd	seq.rs:6	seq_codec.rs:56
seq.encode_scalar	seq.rs:8	seq_codec.rs:112 seq_codec.rs:121 seq_codec.rs:131
seq.simd_scalar_equivalence	seq.rs:9	seq.rs:504 seq.rs:516 seq_codec.rs:55 seq_codec.rs:79 seq_codec.rs:94
tabix.bai_reuse	index.rs:105	tabix_index.rs:39
tabix.compression	index.rs:107	tabix_index.rs:91
tabix.header	index.rs:104	tabix_index.rs:38
tabix.index_data	index.rs:106	tabix_index.rs:40
tabix.magic	index.rs:103	index.rs:591 tabix_index.rs:37
tabix.pseudo_bin	index.rs:178	tabix_index.rs:58
tabix.query	index.rs:177	tabix_index.rs:57
types.base.error_display	base.rs:483	base.rs:663
types.base.from_str_validation+2	base.rs:393	base.rs:629 base.rs:638 base.rs:648
types.phred.as_int_clamp	phred.rs:34	phred.rs:104 phred.rs:113 phred.rs:139
types.phred.non_negative	phred.rs:49	phred.rs:123 phred.rs:131
unified.detect_error	reader.rs:419 reader.rs:626	unified_reader.rs:63 unified_reader.rs:74
unified.detect_format	reader.rs:326	reader.rs:400 unified_reader.rs:43 unified_reader.rs:52 unified_reader.rs:153 unified_reader.rs:187
unified.detect_index	reader.rs:418 reader.rs:625	unified_reader.rs:45 unified_reader.rs:54
unified.fetch_equivalence	reader.rs:171	compare_cram_parsing.rs:206 compare_cram_with_htslib.rs:112 compare_cram_with_noodles.rs:78 unified_reader.rs:85 unified_reader.rs:207 unified_reader.rs:247
unified.fork_bam	reader.rs:186	unified_reader.rs:128
unified.fork_cram	reader.rs:188	compare_cram_with_htslib.rs:221 unified_reader.rs:188
unified.fork_sam	reader.rs:187	unified_reader.rs:129
unified.header_from_sam_text	header.rs:141	header.rs:281
unified.push_fields_equivalence	record_store.rs:168	record_store.rs:125 record_store.rs:178
unified.reader_api	reader.rs:122	unified_reader.rs:86
unified.reader_enum	reader.rs:104	unified_reader.rs:44 unified_reader.rs:53
unified.readers_accessors	reader.rs:239	unified_reader.rs:169
unified.readers_backward_compat	reader.rs:129	unified_reader.rs:154
unified.readers_fork	reader.rs:232	compare_cram_with_htslib.rs:220 unified_reader.rs:196
unified.readers_open	reader.rs:222	unified_reader.rs:168 unified_reader.rs:177 unified_reader.rs:186
unified.readers_struct	reader.rs:203	unified_reader.rs:167
unified.record_store_push	record_store.rs:166	record_store.rs:126
unified.sort_order	header.rs:223 reader.rs:142 reader.rs:239 reader.rs:165	header.rs:329 header.rs:337 header.rs:345 header.rs:353 header.rs:364 header.rs:374